Identification

Title

Spatial model fitting for large datasets with applications to climate and microarray problems

Abstract

Many problems in the environmental and biological sciences involve the analysis of large quantities of data. Further, the data in these problems are often subject to various types of structure and, in particular, spatial dependence. Traditional model fitting often fails due to the size of the datasets since it is difficult to not only specify but also to compute with the full covariance matrix describing the spatial dependence. We propose a very general type of mixed model that has a random spatial component. Recognizing that spatial covariance matrices often exhibit a large number of zero or near-zero entries, covariance tapering is used to force near-zero entries to zero. Then, taking advantage of the sparse nature of such tapered covariance matrices, backfitting is used to estimate the fixed and random model parameters. The novelty of the paper is the combination of the two techniques, tapering and backfitting, to model and analyze spatial datasets several orders of magnitude larger than those datasets typically analyzed with conventional approaches. Results will be demonstrated with two datasets. The first consists of regional climate model output that is based on an experiment with two regional and two driver models arranged in a two-by-two layout. The second is microarray data used to build a profile of differentially expressed genes relating to cerebral vascular malformations, an important cause of hemorrhagic stroke and seizures.

Resource type

document

Resource locator

Unique resource identifier

code

http://n2t.net/ark:/85065/d75x2bg5

codeSpace

Dataset language

eng

Spatial reference system

code identifying the spatial reference system

Classification of spatial data and services

Topic category

geoscientificInformation

Keywords

Keyword set

keyword value

Text

originating controlled vocabulary

title

Resource Type

reference date

date type

publication

effective date

2016-01-01T00:00:00Z

Geographic location

West bounding longitude

East bounding longitude

North bounding latitude

South bounding latitude

Temporal reference

Temporal extent

Begin position

End position

Dataset reference date

date type

publication

effective date

2008-06-11T00:00:00Z

Frequency of update

Quality and validity

Lineage

Conformity

Data format

name of format

version of format

Constraints related to access and use

Constraint set

Use constraints

Limitations on public access

None

Responsible organisations

Responsible party

contact position

OpenSky Support

organisation name

UCAR/NCAR - Library

full postal address

PO Box 3000

Boulder

80307-3000

email address

opensky@ucar.edu

web address

http://opensky.ucar.edu/

name: homepage

responsible party role

pointOfContact

Metadata on metadata

Metadata point of contact